So the last post on the blog by…

So…the last post on the blog by me! Finally finished our UROS project today! Excited to have a bit of summer left! Had an amazing time and it’s been a great experience and i’ve learnt alot. I’ve learnt all the bones in the human body, and many anthropology skills and techniques to age sex and determine stature and these skills i will keep with me to help in my final year! I’ve also met lovely people in the micro lab that i probably wouldn’t have got chance to if i hadn’t done this project so for that i am thankful! Being able to work with my peers and lecturers has been a good experience and being able to work in a lab for a long length of time!

On to the project results…this week we swabbed the bones after being cleaned with ethanol and then we handled one set of bones with gloves on and one set without gloves and swabbed these too to come to some kind of conclusion as to wearing gloves affects contamination on the bone. The results mainly pointed in this direction with the swabs taken after handling without gloves gave more bacterial growth than that with gloves on.

We weren’t able to identify any of the bacteria in this project but it will make for an interesting project next summer maybe!

Thanks again everyone involved, its been great! 🙂 Enjoy your summers!!!

So i keep forgetting to post but Dan…

So, i keep forgetting to post but Dan has been up to date which is good so you can get the idea of what we have been doing!

Week 4 consisted mostly of waiting for our supplies to come in again and taking student as producer literally by experimenting with cotton swabs on some of the bones after handling to see how long the bacteria maintains on the bones. The results for these came in all shapes colours and sizes and so we were unsure if they were viable and not contaminated. We also helped out an an open day and workshops teaching the students how to age, sex and determine stature of the skeletons.

Week 5 we continued the experimenting into the cotton swabs and the bacteria living on the bones. However Wednesday we actually found all our supplies and so the micro side of the project finally began!!!
We plated up agar and made ringers in prep for our swabs. Starting with swabbing the bones with the polywipe sponges for a background check to see what was already on the bones, doing 5 repeats of 5 bones so a total of 25 nutrient agar plates, these were incubated at 37degrees for 48 hours and looked at again on Friday! Obviously as Dan has already said, the results were weird! research for you. They could have been from contamination, if not then our bones have lots of different types of bacteria/fungus present!! We sub-cultured most of the plates onto several different types of agar and we also took samples and gram stained them to see if we could identify what we had…this left us even more confused!

Now we are in our final week of the project and yesterday we cleaned 5 of the bones with ethanol (50%, 75% and 95%) and let the ethanol soak in to destroy bacteria, then swabbed with the polywipe sponges and placed in ringers solution, each plate had 0.1ml pipetted on and there was again 5 repeats for each bone. The same bones were then handled with gloves for 5 minutes and then repeated the swabbing steps to see what grows on bones handled with gloves. Today we made up 60 more agar plates for use tomorrow when we will clean another 5 bones and handle these with bare hands and see how they differ, like the project is called….gloves or no gloves?

We will have to wait and see!!

Just had a check on the agar plates…

Just had a check on the agar plates from yesterday. There is zero growth thus far on the bones that were alcohol swabbed and only minimal growth on the bones handled with gloves. This is what i expected to see and hopefully when we compare to the plates we start growing tomorrow, we will be able to say whether or not wearing gloves makes a difference.

However due to the state of the incubators and the incubation room, as well as working shoulder to shoulder with other people, i think its important to note that any results we get are only indicators and not a definitive answer, so don’t expect to just go downstairs and start fondling with one of the bodies without protection!!!!!

Glad we are in our final week, i would like to enjoy some of the summer sun before we lose it!!!

Week 5 update Monday Gillian sent me a…

Week 5 update
Monday – Gillian sent me a 12 page skeleton evaluation form which detailed things like age, sex and height. I spent the day doing that.
Tuesday – The previous set of photographs looked too dark (though they looked ok though the camera’s screen) and so I had to do them again. This time I used the flash with both the diffuser on and set on low in order to get the photographs light enough without being washed out.
Wednesday – I went up to the analytical labs to ask how I would analyse the soil/clay I got out of the skull. Unfortunately the tests would take much longer then the remaining time left on the project, and so this will have to be done by the next person. I also measured the skull using the method in ‘Standards for Data Collection from Human Skeletal Remains’.
Thursday – I re-measured the skull using a set of digital callipers to make sure they were right, I then planned my UROS report.
Friday – Friday was a short day, I used the measurements in a program called Foredisk 3.1 in order to determine the race of the skull. Using both the Forensic and Howell databases it was determined that the skull belonged to a white male, which is what I expected it to be.

Going over the results we gathered from our…

Going over the results we gathered from our background swab of the bones and can’t help thinking how frustrating research is!!!! Why are all my bones growing different stuff on them, and why is it every time i do a repeat i get a different result!!!! Why can’t it all be as expected and work out for a nice simple conclusion????

I guess thats just the nature of research, and we can’t make the evidence fit the conclusions we want, the conclusions must fit the evidence.

Don’t get me wrong i’m still enjoying the research and my experiances this summer, its just the lazy part of me wishing it was all black and white and i could get a simple logical answer.

Right our project has finally begun We started…

Right our project has finally begun!!!!!! We started swabbing the bones as they were ie. no cleaning or handling- these swabs were placed in ringers and pipetted out onto nutrient agar and left to grow at 37 degrees for 48 hours. The result showed very little growth on the majority of plates 1-3 colonies on most or none at all!!! Except a few plates which had become overrun by a “Fuzzy mass” We are now using gram staining and subculturing to identify the colonies and the “Fuzzy mass”

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Another long update post must remember to do…

Another long update post, must remember to do this more regularly!!!

So polywipes for our project still haven’t come in, but while we wait we are using spare supplies to see how long bacteria prevails on skeletal material. Unfortunately the results were a bit screwed up, so we have had to start again. On the bright side, despite the screwy results it looked like if there was anything on the bones it was gone after 24 hours, hopefully our repeat will show the same.

Also been very busy dealing with open days and work experiance students. On wednesday i think it was (Open day) we could barely do anything because of the prosepective new students and their families buzzing in and out asking questions. Had a workshop earlier last week as well, which was fun, teaching a class about how to build a biological profile from skeletal remains; some of the kids were really enthusiastic and eager, but as always there were a few who messed around and had me going up the wall!!!!!

Had a work experiance kid in with us for one day. His name was Luke, we showed him the bones and had him attempt to age, sex and calculate stature of one of the remains, and then showed him blood spatter and got our friend Hannah (Who is working with Dr Croxton on the composition of fingerprints) to talk about her project before we handed him back to Deborah for the afternoon, hope he had a good time.

All in all a busy and frustrating week, but i keep learning new tricks and tips and am still having a good time. Hopefully come wednesday i will have definitive results on the persistance of microbes on skeletal material (Just waiting overnight while the plates incubate) and possibly have our final supplies for the main project

Hello So as Dan has already mentioned last…

Hello!

So, as Dan has already mentioned, last week we spent a few days in the micro lab preparing nutrient agar plates to test our negative control of the polywipe sponges.
The polywipe sponges are out of date (Oct ’11) and therefore we needed to do a negative control to see if we could still use them to swab our bones.

We tested out 3 ways to put our sample onto the agar plate, a simple 0.1ml spread plate, another plate wiping the sponge itself onto the plate and the third way was by filtering the rest of the ringers solution onto a filter paper to place onto the agar. We learnt how to use the stomacher which is pretty simple so will be able to use that in the future for our project samples.
After incubating the plates at 37degrees for 24hours we could see some small colonies on the plates!! NOT WHAT WE WANTED! So then over the weekend we incubated them again this time at 25degrees to see if anything else grows.

Unfortunately it did 🙁 and now we can’t use the polywipe sponges and have to wait for new ones to be ordered in!!!

Today we checked up on our plates and recorded our observations, they seemed to be fungal growths on the plates so we sub-cultured them onto an MEA plate for curiosity as to where the fungi came from and possibly identify it. This has been incubated at 37degrees again and we will look at this tomorrow to see if anything has happened!

Hey finally round to my second of these…

Hey finally round to my second of these.

The catchup is that we have cleared our plan with Clare for the micro, and have poured a couple of Agar plates and are now waiting on results of our negative control (Blank sponge) hopefully tht will come back as expected and we can begin processing our samples next week.

Learnt how to use the stomacher with Sophie and had a good time in micro, fascinating what some of the guys are doing research on even if some of it is murdering caterpillars!!!!!!!

The fiskerton skull that Jacob is working on is now free of the massive lump of clay, and the skull is nearly clean and ready for analysis. It took 3 days to extract the clay!!!!

Sophie and i also trialed swabbing bones with ethanol to disinfect them, as reccomended by a guy at the university of Indianapolis, glad to say the bones were not damaged in any way (Dread to think what Gillian would have done if they were damaged)

Overall very good time on this research and the things in between like school visits. We had people from two of the three school groups pass out in gen lab 3, starting to think the room is cursed?!?!? I myself believe am getting very good at talking about the bones and how to analyse them, Gillian emabarrased me slightly by testing how to side bones and i failed; so will now work on that for next time.

Hopefully be living in SB209 from next week, so see you then

Better late then never eh Week 2 Monday…

Better late then never eh? Week 2:

Monday, Tuesday and Wednesday – We learnt the proper techniques on how to clean bones and began work cleaning up boxes of bones we identified as dirty last week. All in all we cleaned 3/4 boxes worth. I also had a chat with Ron Dixon about the Fiskerton skull. He gave me loads of different ways to get the ball of clay inside the skull out.
Thursday and Friday – These two days were research days, I went to the uni library and checked out loads of books on the Iron Age.

Good evening I haven’t really wrote about what…

Good evening! 🙂
I haven’t really wrote about what we have done so far on our project but after reading Dan and Jacob’s entries I can see they have pretty much covered everything.

But in my own words, in week 1 we learnt how to fill out inventory forms correctly when looking over skeletal remains which included noting whether bones were present or absent. This was quite easy to get the hang of after the first skeleton. There were 4 skeletons laid out for us to look at and get to bases with the names of all the bones properly and where they lay in the human structure; so our next task was to lay out a skeleton for ourselves and understand how to differ between left and right bones etc. After getting to grips with the skeletons we started looking into how you work out the stature of the skeleton, by looking at the leg bones (femur & tibia), and how to determine age (using the pubic symphises on the pelvis and teeth if any were present) and to determine sex (using 5 main features on the skull and also the pelvis). Jacob, Dan and I all went to visit St. Katherine’s which is a church converted to a small museum. We went here as a lot of the bones we have in the lab are from St Katherine’s, however, it didn’t prove to be necessary as there wasn’t much information on the actual bones.

Last week was spent mostly doing inventory of all the bones in the lab and deciding which ones needed cleaning and so learnt the cleaning methods, which are quite simple for mud covered bones, being warm water and a toothbrush! But I imagine cleaning densely covered bones is more difficult. The rest of last week was spent doing our own research to prepare for our start doing the microbiology work, such as researching the best sampling method and the best agar to transfer it too along with looking at what types of bacteria are already present on bones and our hands to see if these can cause degradation.

Now comes the exciting stuff and will keep you all up to date at the end of next week!
Have a good week! 🙂

Right have been a little late setting this…

Right have been a little late setting this up so here goes,

My names Dan and i’m working on a UROS project alongside Sophie Webber, under the superfision of Gillian and Clare. The project is looking at whether or not wearing gloves when handling skeletal material matters. Obviously in forensic cases gloves should always be worn, but with archaeological remains there is great debate about the need to wear gloves. Hopefully by the end of the project we will be able to see whether or not there a scientifically significant transfer of microbiota from handlers to the bones if not wearing gloves. If there is a significant difference in the quantities of microbiota on skeletal material when not where wearing gloves (In comparison to wearing gloves), the next step is to see whether or not the microbiota transeferred from hands actually degrade the bones themselves.

Thats the basics behind our project. now to bring you up to speed with whats happened in the first 2 weeks.

In the first week, i met with Gillian, Clare and Sophie to discuss the project and what we would be doing. Gillian set us off familiarising ourselves with the bones of the body- learning their names, their anatomical positions, and how to sex, age and obtain stature estimations from the bones concerning the individual- this was a great start point and also really boosts my chances of passing the anthropology exam in October/November.

Following this we were then asked to identify which bones in the universities skeletal collection required cleaning, and then to clean those bones. Cleaning bones is a slow process, but oddly hypnotizing so time flies by.

So thats the important stuff thats happened over the past 2 weeks, which doesn’t sound much but the time spent just examining the bones and learning from Gillian has greatly increased my knowledge. Next week Sophie and i will be joining you in the microlab and the project can really get underway.

The two of us have been working closely with another of Gillian’s UROS students, Jacob Abbott, who has been tasked with cleaning and analysing a skull found in Fiskerton LIncolnshire, that is believed to be Iron age!!!!!! How cool is that!!!!!!!! Unfortunately he first has to work out how to remove a huge lump of clay from inside the skull without damaging it, i wish him luck with that.

So i think i have said everything that needs to be said, i’m really enjoying my project thus far, and it staves off the dull boringness of being alone in Lincoln for the summer hols. See you all next week hopefully

Hello everyone I’m doing a Summer research project…

Hello everyone,
I’m doing a Summer research project with Gillian based around the Iron Age skull found near Fiskerton (near Lincoln). I’ve been tasked with both cleaning it up and analysing it. I’ve been working with Dan and Sophie while we learn the skills and techniques we need in order to carry out our projects, here’s a basic list of what we did last week:
Day 1 – We met with Gillian and Clare to discuss the kind of things we need to do over the 6 weeks. Next we checked the inventory of 4 skeletons and filled out the appropriate sheets. We then spent the rest of the day constructing another skeleton in order to familiarise ourselves with the bones in the body.
Day 2 – First we analysed the skeletons in the lab, working out their height, age (using the teeth and pubic symphysis ) and gender (using various features of the skull). We also learnt and revised the bones in the hands and feet. Finally we went though the collection of bones, noting down which needed to be cleaned.
Day 3 – We carried on going though the collection (as there was over 100 boxes it took a long time). After this I made preliminary notes on the Fiskerton skull and made a basic plan of action on how to carry out the analysis.
Day 4 – We went to St. Katherine’s, a musem converted from a church. However, it had very little information about what we were doing.
Day 5 – We revised what we had learnt so far with Gillian.

I’ll most likely update this every week, there’ll be much more information once the project really starts going.

Hi I’m Sophie and I am currently doing…

Hi 🙂

I’m Sophie and I am currently doing a UROS project with Gillian and Clare and my fellow student Dan. We are basing our project on human bones and although not in the microlabs yet we will be in there shortly sampling bacteria off bone surfaces. We are doing research towards finding out if it is necessary to wear gloves or not when handling human bones, and whether the bacteria on our hands goes towards the degradation of bones.

We have just finished our first week so there will be more posts to come on what we have been up to, but for now I’m just saying hello 🙂