One of the most important jobs in a…

One of the most important jobs in a microbiology lab is maintaining a culture collection to ensure all the bacterial and fungal strains necessary for research are kept pure and thriving. Unfortunately, without a consistent research programme, this often doesn’t happen in our labs. I need a couple of very specific E. coli strains for my research, but I came back in at the start of this research period to plates for these strains like the first one in this picture of DH5a – almost a year old, so completely dry and, to the unobservant, useless. But, with a little encouragement, I got the few cells out alive as you can see in the second plate, and then within another day to the pure streak in the last plate.

Unfortunately, I wasn’t so lucky with my second strain, C2110, and I’ve had to revert back to a stab culture I finally unearthed, but hopefully I should see growth this morning when I get into the lab.

As a result, I’ve got some of you working on creating a culture collection of some of the random bottles of cells I’ve found lurking around in the incubator room, by creating slopes and stabs for storage. It will really be a revelation if we can get it all sorted out!!

Just something to think about being able to…

Just something to think about – being able to innovate and create novel data as a scientist is about being able to adapt, alter and invent methods to gain new results. Therefore, if you don’t understand the methods you’re using, you can never advance. You’ve probably never really done it before, as I suspect you’ve just blindly followed the provided SOPs, but from this point on, start digging deeper into the science behind the experiment. Learn about the function of every chemical, of every physical action, and you’ll be able to understand why the experiment works the way it does. That is all I do, and that is the main reason why I can make suggestions of change when things aren’t working.

Unloaded autoclave poured 1200ml nutrient agar plates and…

Unloaded autoclave, poured 1200ml nutrient agar plates and 400ml MEA plates and set universal jars as slope jars. Learned that plates that are to be used straight away can be made a little thinner than those being made as stock to be stored.Gram stained first set of culture plates and verified as much as possible E.coli. Little more relaxed today, long lunch and a little waiting for autoclave to complete its 2hr cycle. still cant wait for tomorrow though!

After an exciting introductory week of extracting DNA…

After an exciting introductory week of extracting DNA from dogs testes and starting projects relating to water samples from the brayford,today has been a little bit less busy but knowledgable non the less. Today I have learnt how to make nutrient agar and mea agar and I have been researching plasmids and ecoli for my projects.

Started the morning off by streaking nutrient agar…

Started the morning off by streaking nutrient agar plates from cultures thought to be ‘dead’ and put them in the incubator til tomrrow. Stock cultures from the lab were previously streaked on agar plates, today my task was to isolate single colonies and make up streak plates, these were placed in the incubator until tomorrow when they will hopefully have grown so they can then be gram stained and identified. Then i chose a project to conduct over the summer, If a pure sample of soya can be located then i hope to design a working PCR test to detect GM soya in non GM foods.

Not a lab update as such but today…

Not a lab update as such, but today i learned how to set up a blog. Sooo proud of myself right now! Had a fantastic 3 days in the lab. Made a selection of agars, collected water from the Brayford (dodging the muscovy ducks), water filtration, extracted dna from dogs nuts, made agarose gel and ran electrophoresis. Learned a couple of new research websites and met some really nice people x Phew! can’t wait for next week x

Starting to get set up in the lab…

Starting to get set up in the lab now – another week and we might get some interesting results to post!

1. Alkaline lysis solutions made up, ready for plasmid extraction for the stability plasmid experiments for Sophie. Struggling with getting my E. coli cultures revived after they were left to die off in the fridge, but I’m confident I’ll get them back.

2. Lysis buffers set up ready for bulk NA extraction from dog testes (tomorrow’s activity) so everyone can have a go at some guaranteed successful gel electrophoresis results before getting stuck into the much more temperamental PCR experiments.

3. Plates from water from the Brayford Pool incubating – planning on getting some prelim data on total viable counts from the pool on a more or less daily basis for Ryan, to help him plan sample sizes when he gets started. Also got the MLSA plates made to start culturing E. coli for Rosie.

4. Box of random fibre samples located and tidied a little, so back on with the plan of writing a book of images for forensic fibre analysis, and revisiting some of my final year students projects to see if I can get publishable data with a few more experimental repeats.

That’s my round-up – what about yours?